I’m seeing strange VyOS behavior in VyOS 2025.09.27-0018-rolling and in 2025.09.17-0018-rolling earlier. After reboot I got warning when enter configuration mode:
WARNING: There was a config error on boot: saving the configuration now could overwrite data. You may want to check and reload the boot config
When I do “compare commands 0” I see that all PKI section is gone - CAs and ACME certificate. After “load” command I get my config back and after commit I see Let’s Encrypt certificate being getting from scratch. After that everything works like a charm till next reboot.